PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_111475g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 1015aa    MW: 113518 Da    PI: 4.4704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_111475g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-06776797425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C ff r G C +G++C+F H
  MA_111475g0020 776 PECYFFKRDGRCFRGASCRFVH 797
                     68******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099059.03E-151488IPR000061SWAP/Surp
SMARTSM006481.4E-63696IPR000061SWAP/Surp
PROSITE profilePS5012812.4263880IPR000061SWAP/Surp
PfamPF018052.2E-103973IPR000061SWAP/Surp
SMARTSM003560.0077772799IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723772800IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MQTSPVRDAP GLPQPLPPIS SSLLAPPSKP SDEELVRNIE LLSQFVVKNG PEFENMARAK  60
EAGNPKFSFL FGGEPGSDAW IGFEYFKWTK MKCELELRIQ QKPEVKQLAE TSVPPEPTQQ  120
LAETCFPPEP TQKLANTLLP SQPTHQRAQL AIALEGVAKS PAGSDTDMED DFISLAPSNK  180
DHKDAHTNQA RETKIELKGD KISEQQSFAC LSSSLIPTNT SSKELMPVIG NQLGELKLEN  240
QKSKGVCNVS EFKGPSVEDR SPIQSRPKEL QNIQEGAFVE HSTPPDKRLY QMSEGPCIQD  300
LSPVRYFPDE FQQASEVPSI KDMNPVQSLP NEFQQRSEGL CVEDVSPVRS SPGELEHTPR  360
GLLVEDLSPV HSSLQRLQQM YDGPSIEDLS PVQSSPKELH DISEGPCVED LSPVQSSQKD  420
LPQMYEGLSV EDASPVQSFA EELQQTSHTN IDEEGHTSSA SREEPSGELN AVQEMDYSME  480
EPFEVITGKE GDSSMKESFD AIAEQERDFS MKEPFDAIVE QEMDFSMKEP NAVLSEQERD  540
SLMKEPFEGI AEQESHSSMK EAFEVIAEKE RVSSMKELCE VTAEQERDSS MKEPLEVRSM  600
GPICEITGPA SEHNEQIENI DVADKIRSNS TAVSDIEGKE IEAVKFEVSE SFKGLYECVP  660
QENSNIKEVD NANLDTEMPM EHEQKPLNVD EFGRLIREGA SDSESDGVLY TGRAGTRSPS  720
RGDRRKRNPS PRRRRGRRSR SRSWSPRRQR SRSRTPPADF RRGGEAEGRK RRGSAPECYF  780
FKRDGRCFRG ASCRFVHQEV PVDNISKWSG GGRSREQKEL IRDTQISHTA KEVSAKMEED  840
KPESMSPDRL CNGQDSLILK EKISEQGKQL DEVSVSEKGM LTREANHGSC MPELDANLDS  900
QPPQNANLDS ELHLTPPGKE DIQSSPQNRD FQSESLPVED SQSQALKMEE ISPHLMPTGD  960
FHSLPPPTED SRSQSLPVED FRSQPLHMED FRSQPLQPPE MEEIPPHPLP TEDXX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723734RRKRNPSPRRRR